| # | Group A | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Adhyaksa | 10 | 5 | 3 | 2 | 14:11 | 3 | 18 | |
| 2. | Garudayaksa | 11 | 4 | 5 | 2 | 10:6 | 4 | 17 | |
| 3. | Persikad Depok | 11 | 4 | 3 | 4 | 16:18 | -2 | 15 | |
| 4. | Bekasi City | 10 | 3 | 4 | 3 | 12:9 | 3 | 13 | |
| 5. | Persiraja Aceh | 11 | 3 | 4 | 4 | 11:12 | -1 | 13 | |
| 6. | Sumsel United | 11 | 3 | 2 | 6 | 14:16 | -2 | 11 | |
| 7. | PSPS Riau | 12 | 2 | 5 | 5 | 22:30 | -8 | 11 | |
| 8. | PSMS Medan | 11 | 2 | 3 | 6 | 13:17 | -4 | 9 | |
| 9. | Persekat | 11 | 3 | 0 | 8 | 6:20 | -14 | 9 | |
| 10. | Sriwijaya | 11 | 0 | 2 | 9 | 8:48 | -40 | 2 | |
| # | Group B | MP | W | D | L | G | GD | Pts | Form |
| 1. | Barito Putera | 11 | 6 | 2 | 3 | 12:7 | 5 | 20 | |
| 2. | PSS Sleman | 10 | 5 | 3 | 2 | 19:9 | 10 | 18 | |
| 3. | Tornado Pekanbaru | 10 | 5 | 2 | 3 | 16:12 | 4 | 17 | |
| 4. | Persela Lamongan | 11 | 4 | 4 | 3 | 12:9 | 3 | 16 | |
| 5. | Deltras Sidoarjo | 11 | 5 | 1 | 5 | 13:13 | 0 | 16 | |
| 6. | Persipura Jayapura | 11 | 4 | 3 | 4 | 12:11 | 1 | 15 | |
| 7. | Persiku Kudus | 11 | 3 | 2 | 6 | 16:15 | 1 | 11 | |
| 8. | PSIS Semarang | 11 | 2 | 3 | 6 | 6:16 | -10 | 9 | |
| 9. | Balikpapan | 11 | 1 | 3 | 7 | 7:17 | -10 | 6 | |
| 10. | Persipal BU | 10 | 0 | 1 | 9 | 4:31 | -27 | 1 |